BPS Publications
M. Calder, S. Gilmore and J. Hillston; Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA; Transactions on Computational Systems Biology VII, vol. 4230, pp. 1-23, Springer, 2006; link
M. Calder, A. Duguid, S. Gilmore and J. Hillston; Stronger computational modelling of signalling pathways using both continuous and discrete-space methods; Computational Methods in Systems Biology (CMSB 2006), LNBI, to appear; link
M. Calder, V. Vyshemirsky, D. Gilbert, and R. Orton; Analysis of Signalling Pathways using Continuous Time Markov Chains; Transactions on Computational Systems Biology VI, vol. 4220, pp. 44-67, Springer, 2006; link
M. Calder and J. Hillston; What do scaffold proteins really do?; Fifth Workshop on Process Algebra and Stochastically Timed Activities (PASTA 2006), Imperial College, 2006.; link.
David Gilbert and Monika Heiner; From Petri Nets to Differential Equations - an Integrative Approach for Biochemical Network Analysis; 27th International Conference on Application and Theory of Petri Nets and other models of concurrency 1006 (ATPN06); link
Richard J Orton, Oliver E Sturm, Vladislav Vyshemirsky, Muffy Calder, David R Gilbert and Walter Kolch; Computational modelling of the receptor tyrosine kinase activated MAPK pathway; Biochemical Journal; Vol 392 (2) 249-261, 01/12/2005; link.
Walter Kolch, Muffy Calder and David Gilbert; When kinases meet mathematics: the systems biology of MAPK signalling; FEBS Letters; 579:8, 1891-5, 2005; link
M. Calder, V. Vyshemirsky, D. Gilbert and R. Orton; Analysis of Signalling Pathways using the Prism Model Checker; Proceedings of CMSB (Computational Methods in Systems Biology) 2005; link
M. Calder, S. Gilmore and J. Hillston; Automatically deriving ODEs from process algebra models of signalling pathways; Proceedings of CMSB (Computational Methods in Systems Biology) 2005; link
M. Calder, S. Gilmore and J. Hillston; Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA; Proceedings of Bio-CONCUR 2004, Electronic Notes in Theoretical Computer Science, 2004; link
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