BPS: A Software Tool for the Simulation and Analysis of Biochemical Networks

Bioinformatics Research Centre - Department of Computing Science and the Beatson Institute
University of Glasgow

The aim of this interdisciplinary project is to model diverse biochemical networks and develop an associated computational system to facilitate the analysis of the behaviour of these networks. Biochemical pathways govern fundamental biological control networks; while individual pathways are understood, the combinatorial complexity of the biological control apparatus is too high to be fully understood through "wet" analysis alone.

We are developing innovative software tools that can faithfully simulate the behaviour of biochemical networks, focussing on programmed cell death (apoptosis) and growth factor activated kinase (MAPK). Both networks are at the focus of current drug discovery efforts in important disease areas including cancer, arteriosclerosis, stroke, heart disease, chronic inflammatory and degenerative diseases. The tools we are developing will facilitate basic research by enabling a deeper understanding of the effects of mutations, and applied research by helping to predict drug effects. A strategic aspect of this work is the continuous cross check between modelling and real experimental data.

Associated with this project are 3 Industrial PhD studentships funded by Scottish Enterprise.

This interdisciplinary project involves bioinformatics, biochemistry and computer science, with contributions from IBM and Definiens.

Funding is for 3 researchers over 4 years at a total of £940,000 provided by the Department of Trade and Industry UK, under the Beacon scheme - see www.beaconprojects.org.uk.

The project was launched on 20 November 2002 at an event organised by the DTI.

Project presentation slideshow: HTML, PDF

Investigators:
Professor David Gilbert
Professor Muffy Calder
Professor Walter Kolch
Professor Keith van Rijsbergen

Researchers:
Richard Orton - Bioinformatician
Oliver Sturm - Biologist

Scottish Enterprise PhD Industrial Studentships : University of Glasgow, CXR Biosciences and Cyclacel.
Two PhD Industrial Studentiships are being held at the University of Glasgow, funded by Scottish Enterprise through their Biotechnology programme. These studentships are being undertaken in collaboration with the Department of Trade and Industry funded BPS project. More information on the student projects can be found at www.brc.dcs.gla.ac.uk/projects/scotentstudenships

Contact: Professor David Gilbert, drg@brc.dcs.gla.ac.uk